HL_7ASP_067

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGGGUAAGUUCCG

Length

13 nucleotides

Bulged bases

7ASP|1|Y|U|1982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_067 not in the Motif Atlas

Geometric match to HL_5XUZ_001

Geometric discrepancy: 0.1134

The information below is about HL_5XUZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

7ASP|1|Y|C|1974
7ASP|1|Y|G|1975
7ASP|1|Y|G|1976
7ASP|1|Y|G|1977
7ASP|1|Y|U|1978
7ASP|1|Y|A|1979
7ASP|1|Y|A|1980
7ASP|1|Y|G|1981
7ASP|1|Y|U|1982
7ASP|1|Y|U|1983
7ASP|1|Y|C|1984
7ASP|1|Y|C|1985
7ASP|1|Y|G|1986

Current chains

Chain Y

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L14

Chain X

Small subunit ribosomal RNA; SSU rRNA