HL_7ASP_068

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

7ASP|1|Y|A|2057, 7ASP|1|Y|A|2058, 7ASP|1|Y|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_068 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1312

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

7ASP|1|Y|G|2054
7ASP|1|Y|U|2055
7ASP|1|Y|G|2056
7ASP|1|Y|A|2057
7ASP|1|Y|A|2058
7ASP|1|Y|G|2059
7ASP|1|Y|A|2060
7ASP|1|Y|U|2061
7ASP|1|Y|G|2062
7ASP|1|Y|C|2063

Current chains

Chain Y

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain P

50S ribosomal protein L21

Chain Z

50S ribosomalprotein L32p