HL_7ASP_071

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7ASP|1|Y|G|2277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_071 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.1278

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7ASP|1|Y|C|2275
7ASP|1|Y|U|2276
7ASP|1|Y|G|2277
7ASP|1|Y|G|2278
7ASP|1|Y|G|2279
7ASP|1|Y|G|2280
7ASP|1|Y|C|2281
7ASP|1|Y|G|2282
7ASP|1|Y|G|2283

Current chains

Chain Y

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27