HL_7ASP_074

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUGUAAAGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_074 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3994

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7ASP|1|Y|G|2350
7ASP|1|Y|U|2351
7ASP|1|Y|G|2352
7ASP|1|Y|U|2353
7ASP|1|Y|A|2354
7ASP|1|Y|A|2355
7ASP|1|Y|A|2356
7ASP|1|Y|G|2357
7ASP|1|Y|G|2358
7ASP|1|Y|C|2359

Current chains

Chain Y

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27