HL_7AZS_004

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

7AZS|1|16SA|U|835, 7AZS|1|16SA|G|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_004 not in the Motif Atlas

Homologous match to HL_6CZR_075

Geometric discrepancy: 0.2901

The information below is about HL_6CZR_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.4

Basepair signature

cWW-F-F

Number of instances in this motif group

28

Unit IDs

7AZS|1|16SA|C|832
7AZS|1|16SA|C|833
7AZS|1|16SA|U|834
7AZS|1|16SA|U|835
7AZS|1|16SA|G|836
7AZS|1|16SA|G|837

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S17A

30S ribosomal protein S17

Chain S20A

30S ribosomal protein S20