HL_7AZS_007

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_007 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.0781

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7AZS|1|16SA|U|937
7AZS|1|16SA|G|938
7AZS|1|16SA|A|939
7AZS|1|16SA|G|940
7AZS|1|16SA|A|941
7AZS|1|16SA|G|942

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S12A

30S ribosomal protein S12

Chain S17A

30S ribosomal protein S17

Chain S4A

30S ribosomal protein S4

Chain S5A

30S ribosomal protein S5