HL_7AZS_026

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

7AZS|1|16SA|U|1764, 7AZS|1|16SA|G|1767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_026 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.3321

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

7AZS|1|16SA|G|1762
7AZS|1|16SA|U|1763
7AZS|1|16SA|U|1764
7AZS|1|16SA|C|1765
7AZS|1|16SA|G|1766
7AZS|1|16SA|G|1767
7AZS|1|16SA|C|1768

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S9A

30S ribosomal protein S9