HL_7AZS_033

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUGAUCCUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_033 not in the Motif Atlas

Homologous match to HL_5J7L_001

Geometric discrepancy: 0.074

The information below is about HL_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.5

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7AZS|1|16SB|U|658
7AZS|1|16SB|U|659
7AZS|1|16SB|U|660
7AZS|1|16SB|G|661
7AZS|1|16SB|A|662
7AZS|1|16SB|U|663
7AZS|1|16SB|C|664
7AZS|1|16SB|C|665
7AZS|1|16SB|U|666
7AZS|1|16SB|G|667
7AZS|1|16SB|G|668

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S5B

30S ribosomal protein S5