HL_7AZS_040

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_040 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1036

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7AZS|1|16SB|C|961
7AZS|1|16SB|A|962
7AZS|1|16SB|C|963
7AZS|1|16SB|U|964
7AZS|1|16SB|G|965
7AZS|1|16SB|A|966
7AZS|1|16SB|G|967
7AZS|1|16SB|A|968
7AZS|1|16SB|C|969
7AZS|1|16SB|A|970
7AZS|1|16SB|C|971
7AZS|1|16SB|G|972
7AZS|1|16SB|G|973
7AZS|1|16SB|G|974

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S16B

30S ribosomal protein S16

Chain S20B

30S ribosomal protein S20