HL_7AZS_042

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_042 not in the Motif Atlas

Homologous match to HL_4LFB_010

Geometric discrepancy: 0.0949

The information below is about HL_4LFB_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7AZS|1|16SB|C|1020
7AZS|1|16SB|G|1021
7AZS|1|16SB|C|1022
7AZS|1|16SB|A|1023
7AZS|1|16SB|A|1024
7AZS|1|16SB|G|1025

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S16B

30S ribosomal protein S16