HL_7AZS_044

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGACGAGG

Length

9 nucleotides

Bulged bases

7AZS|1|16SB|C|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_044 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3845

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7AZS|1|16SB|C|1097
7AZS|1|16SB|C|1098
7AZS|1|16SB|G|1099
7AZS|1|16SB|A|1100
7AZS|1|16SB|C|1101
7AZS|1|16SB|G|1102
7AZS|1|16SB|A|1103
7AZS|1|16SB|G|1104
7AZS|1|16SB|G|1105

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S16B

30S ribosomal protein S16