HL_7AZS_076

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

7AZS|1|23SA|G|354, 7AZS|1|23SA|A|355, 7AZS|1|23SA|A|356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_076 not in the Motif Atlas

Geometric match to HL_7RQB_012

Geometric discrepancy: 0.0804

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

7AZS|1|23SA|G|352
7AZS|1|23SA|U|353
7AZS|1|23SA|G|354
7AZS|1|23SA|A|355
7AZS|1|23SA|A|356
7AZS|1|23SA|A|357
7AZS|1|23SA|G|358
7AZS|1|23SA|C|359
7AZS|1|23SA|C|360

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L24A

50S ribosomal protein L24

Chain L4A

50S ribosomal protein L4