HL_7AZS_124

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_124 not in the Motif Atlas

Geometric match to HL_7RQB_058

Geometric discrepancy: 0.0582

The information below is about HL_7RQB_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7AZS|1|23SA|C|2389
7AZS|1|23SA|G|2390
7AZS|1|23SA|A|2391
7AZS|1|23SA|A|2392
7AZS|1|23SA|A|2393
7AZS|1|23SA|G|2394

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L18A

50S ribosomal protein L18

Chain L33A

50S ribosomal protein L33