HL_7AZS_126

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_126 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3331

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7AZS|1|23SA|C|2486
7AZS|1|23SA|G|2487
7AZS|1|23SA|U|2488
7AZS|1|23SA|C|2489
7AZS|1|23SA|C|2490
7AZS|1|23SA|A|2491
7AZS|1|23SA|C|2492
7AZS|1|23SA|A|2493
7AZS|1|23SA|G|2494

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain ASIA

Transfer RNA; tRNA

Chain L16A

50S ribosomal protein L16

Chain L6A

50S ribosomal protein L6