HL_7AZS_134

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

7AZS|1|23SA|A|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_134 not in the Motif Atlas

Geometric match to HL_7RQB_068

Geometric discrepancy: 0.0747

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7AZS|1|23SA|G|2832
7AZS|1|23SA|A|2833
7AZS|1|23SA|A|2834
7AZS|1|23SA|G|2835
7AZS|1|23SA|A|2836
7AZS|1|23SA|C|2837
7AZS|1|23SA|C|2838
7AZS|1|23SA|A|2839
7AZS|1|23SA|C|2840

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L17A

50S ribosomal protein L17

Chain L19A

50S ribosomal protein L19

Chain L3A

50S ribosomal protein L3