HL_7AZS_138

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

7AZS|1|23SB|G|123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_138 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.0699

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7AZS|1|23SB|G|121
7AZS|1|23SB|G|122
7AZS|1|23SB|G|123
7AZS|1|23SB|A|124
7AZS|1|23SB|A|125
7AZS|1|23SB|C|126

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L23B

50S ribosomal protein L23

Chain L34B

50S ribosomal protein L34