HL_7AZS_170

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

7AZS|1|23SB|U|1504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_170 not in the Motif Atlas

Geometric match to HL_7RQB_037

Geometric discrepancy: 0.0744

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

7AZS|1|23SB|C|1502
7AZS|1|23SB|A|1503
7AZS|1|23SB|U|1504
7AZS|1|23SB|G|1505
7AZS|1|23SB|G|1506
7AZS|1|23SB|A|1507
7AZS|1|23SB|C|1508
7AZS|1|23SB|G|1509

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L17B

50S ribosomal protein L17