HL_7AZS_177

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_177 not in the Motif Atlas

Homologous match to HL_8VTW_042

Geometric discrepancy: 0.5366

The information below is about HL_8VTW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7AZS|1|23SB|U|1768
7AZS|1|23SB|G|1769
7AZS|1|23SB|A|1770
7AZS|1|23SB|U|1771
7AZS|1|23SB|G|1772
7AZS|1|23SB|A|1773
7AZS|1|23SB|G|1774

Current chains

Chain 23SB

23S rRNA

Nearby chains