HL_7AZS_187

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

7AZS|1|23SB|G|2265

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_187 not in the Motif Atlas

Geometric match to HL_4V9F_055

Geometric discrepancy: 0.1085

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

7AZS|1|23SB|C|2263
7AZS|1|23SB|U|2264
7AZS|1|23SB|G|2265
7AZS|1|23SB|OMG|2266
7AZS|1|23SB|G|2267
7AZS|1|23SB|G|2268
7AZS|1|23SB|C|2269
7AZS|1|23SB|G|2270
7AZS|1|23SB|G|2271

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L16B

50S ribosomal protein L16

Chain L27B

50S ribosomal protein L27

Chain PSIB

Transfer RNA; tRNA