HL_7AZS_210

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(5MU)(PSU)CGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_210 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2708

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7AZS|1|ASIA|G|53
7AZS|1|ASIA|5MU|54
7AZS|1|ASIA|PSU|55
7AZS|1|ASIA|C|56
7AZS|1|ASIA|G|57
7AZS|1|ASIA|A|58
7AZS|1|ASIA|U|59
7AZS|1|ASIA|U|60
7AZS|1|ASIA|C|61

Current chains

Chain ASIA

Phe-tRNA

Nearby chains

Chain 23SA

Large subunit ribosomal RNA; LSU rRNA

Chain L16A

50S ribosomal protein L16

Chain L25A

50S ribosomal protein L25