HL_7AZS_228

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(5MU)(PSU)CGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_228 not in the Motif Atlas

Geometric match to HL_5WWT_002

Geometric discrepancy: 0.2602

The information below is about HL_5WWT_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

7AZS|1|TRNA|G|53
7AZS|1|TRNA|5MU|54
7AZS|1|TRNA|PSU|55
7AZS|1|TRNA|C|56
7AZS|1|TRNA|G|57
7AZS|1|TRNA|A|58
7AZS|1|TRNA|U|59
7AZS|1|TRNA|U|60
7AZS|1|TRNA|C|61

Current chains

Chain TRNA

Phe-tRNA

Nearby chains

Chain 5SA

5S ribosomal RNA; 5S rRNA