HL_7B0Y_005

3D structure

PDB id

7B0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a transcribing RNA polymerase II-U1 snRNP complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUGAUCACGAAGGUG

Length

16 nucleotides

Bulged bases

7B0Y|1|a|G|28, 7B0Y|1|a|A|32

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7B0Y|1|a|C|25
7B0Y|1|a|A|26
7B0Y|1|a|U|27
7B0Y|1|a|G|28
7B0Y|1|a|A|29
7B0Y|1|a|U|30
7B0Y|1|a|C|31
7B0Y|1|a|A|32
7B0Y|1|a|C|33
7B0Y|1|a|G|34
7B0Y|1|a|A|35
7B0Y|1|a|A|36
7B0Y|1|a|G|37
7B0Y|1|a|G|38
7B0Y|1|a|U|39
7B0Y|1|a|G|40

Current chains

Chain a

U1 snRNA

Nearby chains

Chain b

U1 small nuclear ribonucleoprotein 70 kDa