HL_7B5K_003
3D structure
- PDB id
- 7B5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUCGAUCC
- Length
- 9 nucleotides
- Bulged bases
- 7B5K|1|9|U|55, 7B5K|1|9|C|56, 7B5K|1|9|G|57
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7B5K_003 not in the Motif Atlas
- Homologous match to HL_6ORD_037
- Geometric discrepancy: 0.4206
- The information below is about HL_6ORD_037
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 143
Unit IDs
7B5K|1|9|G|53
7B5K|1|9|U|54
7B5K|1|9|U|55
7B5K|1|9|C|56
7B5K|1|9|G|57
7B5K|1|9|A|58
7B5K|1|9|U|59
7B5K|1|9|C|60
7B5K|1|9|C|61
Current chains
- Chain 9
- E-site val tRNA (76-MER)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: