3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
7B5K|1|A|A|125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7B5K_006 not in the Motif Atlas
Homologous match to HL_4WF9_003
Geometric discrepancy: 0.0615
The information below is about HL_4WF9_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

7B5K|1|A|G|123
7B5K|1|A|G|124
7B5K|1|A|A|125
7B5K|1|A|A|126
7B5K|1|A|A|127
7B5K|1|A|C|128

Current chains

Chain A
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain T
50S ribosomal protein L23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4709 s