HL_7B5K_016

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7B5K|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B5K_016 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0993

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7B5K|1|A|G|410
7B5K|1|A|G|411
7B5K|1|A|A|412
7B5K|1|A|C|413
7B5K|1|A|C|414
7B5K|1|A|A|415
7B5K|1|A|U|416
7B5K|1|A|C|417

Current chains

Chain A

23S rRNA

Nearby chains