HL_7B5K_026

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

7B5K|1|A|A|781, 7B5K|1|A|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B5K_026 not in the Motif Atlas

Homologous match to HL_7RQB_024

Geometric discrepancy: 0.0565

The information below is about HL_7RQB_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74322.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

4

Unit IDs

7B5K|1|A|U|779
7B5K|1|A|G|780
7B5K|1|A|A|781
7B5K|1|A|A|782
7B5K|1|A|A|783
7B5K|1|A|G|784
7B5K|1|A|G|785

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2