HL_7B5K_031

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7B5K|1|A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B5K_031 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.582

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7B5K|1|A|C|1064
7B5K|1|A|U|1065
7B5K|1|A|U|1066
7B5K|1|A|A|1067
7B5K|1|A|G|1068
7B5K|1|A|A|1069
7B5K|1|A|A|1070
7B5K|1|A|G|1071
7B5K|1|A|C|1072
7B5K|1|A|A|1073
7B5K|1|A|G|1074

Current chains

Chain A

23S rRNA

Nearby chains