HL_7B5K_087

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B5K_087 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2444

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7B5K|1|a|G|521
7B5K|1|a|C|522
7B5K|1|a|A|523
7B5K|1|a|G|524
7B5K|1|a|C|525
7B5K|1|a|C|526
7B5K|1|a|G7M|527
7B5K|1|a|C|528

Current chains

Chain a

16S rRNA

Nearby chains

Chain 6

mRNA

Chain l

30S ribosomal protein S12