HL_7B5K_111
3D structure
- PDB id
- 7B5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUUCAGAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7B5K_111 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.1453
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
7B5K|1|z|C|32
7B5K|1|z|C|33
7B5K|1|z|U|34
7B5K|1|z|U|35
7B5K|1|z|C|36
7B5K|1|z|A|37
7B5K|1|z|G|38
7B5K|1|z|A|39
7B5K|1|z|G|40
Current chains
- Chain z
- atRNA synthetic Stop tRNA (76-MER)
Nearby chains
- Chain 6
- mRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain l
- 30S ribosomal protein S12
Coloring options: