HL_7B7D_024

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

7B7D|1|2|U|1059

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_024 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.311

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61768.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7B7D|1|2|U|1055
7B7D|1|2|U|1056
7B7D|1|2|U|1057
7B7D|1|2|U|1058
7B7D|1|2|U|1059
7B7D|1|2|U|1060
7B7D|1|2|A|1061
7B7D|1|2|A|1062
7B7D|1|2|U|1063
7B7D|1|2|G|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain f

40S ribosomal protein S27-A