HL_7B7D_042

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

7B7D|1|LA|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_042 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.124

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7B7D|1|LA|U|194
7B7D|1|LA|U|195
7B7D|1|LA|G|196
7B7D|1|LA|G|197
7B7D|1|LA|A|198
7B7D|1|LA|A|199
7B7D|1|LA|C|200
7B7D|1|LA|A|201

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4-A

Chain LU

60S ribosomal protein L26-A

Chain La

60S ribosomal protein L32