HL_7B7D_061

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

7B7D|1|LA|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_061 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.2992

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7B7D|1|LA|C|1023
7B7D|1|LA|G|1024
7B7D|1|LA|A|1025
7B7D|1|LA|A|1026
7B7D|1|LA|A|1027
7B7D|1|LA|U|1028
7B7D|1|LA|G|1029

Current chains

Chain LA

25S rRNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain H

40S ribosomal protein S18-A

Chain LM

60S ribosomal protein L11-B