HL_7B7D_078

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

7B7D|1|LA|C|1793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_078 not in the Motif Atlas

Homologous match to HL_5TBW_040

Geometric discrepancy: 0.103

The information below is about HL_5TBW_040

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

7B7D|1|LA|C|1792
7B7D|1|LA|C|1793
7B7D|1|LA|G|1794
7B7D|1|LA|U|1795
7B7D|1|LA|G|1796

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain Ll

60S ribosomal protein L43-A