HL_7B7D_089

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7B7D|1|LA|A|2372, 7B7D|1|LA|A|2373, 7B7D|1|LA|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_089 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0734

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7B7D|1|LA|G|2369
7B7D|1|LA|G|2370
7B7D|1|LA|G|2371
7B7D|1|LA|A|2372
7B7D|1|LA|A|2373
7B7D|1|LA|C|2374
7B7D|1|LA|G|2375
7B7D|1|LA|G|2376
7B7D|1|LA|G|2377
7B7D|1|LA|C|2378

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain La

60S ribosomal protein L32