HL_7B7D_095

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_095 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.2418

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7B7D|1|LA|A|2673
7B7D|1|LA|A|2674
7B7D|1|LA|C|2675
7B7D|1|LA|A|2676
7B7D|1|LA|G|2677
7B7D|1|LA|A|2678
7B7D|1|LA|A|2679
7B7D|1|LA|A|2680
7B7D|1|LA|U|2681

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LM

60S ribosomal protein L11-B