HL_7B7D_098

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_098 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.0878

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7B7D|1|LA|U|2744
7B7D|1|LA|G|2745
7B7D|1|LA|A|2746
7B7D|1|LA|A|2747
7B7D|1|LA|A|2748
7B7D|1|LA|G|2749

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L5

Chain Lp

60S ribosomal protein L21-A