HL_7B7D_109

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

7B7D|1|LA|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_109 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0981

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7B7D|1|LA|G|3303
7B7D|1|LA|U|3304
7B7D|1|LA|A|3305
7B7D|1|LA|U|3306
7B7D|1|LA|A|3307
7B7D|1|LA|C|3308
7B7D|1|LA|G|3309
7B7D|1|LA|A|3310
7B7D|1|LA|C|3311

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LR

60S ribosomal protein L17-A

Chain LZ

60S ribosomal protein L31-A