HL_7B7D_115

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

7B7D|1|LC|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_115 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.1632

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7B7D|1|LC|G|124
7B7D|1|LC|U|125
7B7D|1|LC|A|126
7B7D|1|LC|U|127
7B7D|1|LC|U|128
7B7D|1|LC|C|129

Current chains

Chain LC

5.8S rRNA

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA