HL_7B7D_116

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGUGGAAG

Length

9 nucleotides

Bulged bases

7B7D|1|Sm|U|16, 7B7D|1|Sm|G|18, 7B7D|1|Sm|G|19, 7B7D|1|Sm|A|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_116 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.1822

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

7B7D|1|Sm|C|13
7B7D|1|Sm|A|14
7B7D|1|Sm|G|15
7B7D|1|Sm|U|16
7B7D|1|Sm|G|18
7B7D|1|Sm|G|19
7B7D|1|Sm|A|20
7B7D|1|Sm|A|21
7B7D|1|Sm|G|22

Current chains

Chain Sm

tRNA

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA