HL_7BL3_053

3D structure

PDB id

7BL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL3_053 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.2798

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7BL3|1|A|C|2248
7BL3|1|A|U|2249
7BL3|1|A|G|2250
7BL3|1|A|G|2251
7BL3|1|A|G|2252
7BL3|1|A|G|2253
7BL3|1|A|C|2254
7BL3|1|A|G|2255
7BL3|1|A|G|2256

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9P

GTPase ObgE/CgtA

Chain W

50S ribosomal protein L27