HL_7BL4_004

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

7BL4|1|A|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL4_004 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3584

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7BL4|1|A|G|136
7BL4|1|A|U|137
7BL4|1|A|U|138
7BL4|1|A|U|139
7BL4|1|A|C|140
7BL4|1|A|G|141
7BL4|1|A|A|142
7BL4|1|A|C|143

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23