HL_7BL4_022

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

7BL4|1|A|U|747, 7BL4|1|A|A|751, 7BL4|1|A|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL4_022 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1256

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7BL4|1|A|U|744
7BL4|1|A|G|745
7BL4|1|A|U|746
7BL4|1|A|U|747
7BL4|1|A|G|748
7BL4|1|A|A|749
7BL4|1|A|A|750
7BL4|1|A|A|751
7BL4|1|A|A|752
7BL4|1|A|A|753

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain 2

50S ribosomal protein L34

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L22