3D structure

PDB id
7BL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UGCUAACG
Length
8 nucleotides
Bulged bases
7BL4|1|A|U|958, 7BL4|1|A|C|961
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7BL4_026 not in the Motif Atlas
Homologous match to HL_7A0S_026
Geometric discrepancy: 0.1558
The information below is about HL_7A0S_026
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

7BL4|1|A|U|955
7BL4|1|A|G|956
7BL4|1|A|C|957
7BL4|1|A|U|958
7BL4|1|A|A|959
7BL4|1|A|A|960
7BL4|1|A|C|961
7BL4|1|A|G|962

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain M
50S ribosomal protein L16

Coloring options:


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