HL_7BL4_036

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7BL4|1|A|A|1453, 7BL4|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL4_036 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.1197

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

7BL4|1|A|C|1451
7BL4|1|A|G|1452
7BL4|1|A|A|1453
7BL4|1|A|C|1454
7BL4|1|A|G|1455
7BL4|1|A|G|1456
7BL4|1|A|U|1457
7BL4|1|A|U|1458
7BL4|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17