HL_7BL4_053

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7BL4|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL4_053 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0952

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7BL4|1|A|C|2248
7BL4|1|A|U|2249
7BL4|1|A|G|2250
7BL4|1|A|G|2251
7BL4|1|A|G|2252
7BL4|1|A|G|2253
7BL4|1|A|C|2254
7BL4|1|A|G|2255
7BL4|1|A|G|2256

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

GTPase ObgE/CgtA

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27