HL_7BL5_064

3D structure

PDB id

7BL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL5_064 not in the Motif Atlas

Geometric match to HL_5X2G_001

Geometric discrepancy: 0.1479

The information below is about HL_5X2G_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7BL5|1|A|C|2658
7BL5|1|A|G|2659
7BL5|1|A|A|2660
7BL5|1|A|G|2661
7BL5|1|A|A|2662
7BL5|1|A|G|2663

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

Ribosomal silencing factor RsfS

Chain 9

GTPase ObgE/CgtA

Chain G

50S ribosomal protein L6