HL_7BOD_011

3D structure

PDB id

7BOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state M (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7BOD|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BOD_011 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1554

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

7BOD|1|A|C|419
7BOD|1|A|U|420
7BOD|1|A|U|421
7BOD|1|A|C|422
7BOD|1|A|G|423
7BOD|1|A|G|424

Current chains

Chain A

16S rRNA (body domain of 30S subunit)

Nearby chains

Chain D

30S ribosomal protein S4