HL_7BOD_018

3D structure

PDB id

7BOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state M (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BOD_018 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2554

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7BOD|1|A|C|840
7BOD|1|A|C|841
7BOD|1|A|U|842
7BOD|1|A|U|843
7BOD|1|A|G|844
7BOD|1|A|A|845
7BOD|1|A|G|846

Current chains

Chain A

16S rRNA (body domain of 30S subunit)

Nearby chains

Chain R

30S ribosomal protein S18