HL_7BOG_012

3D structure

PDB id

7BOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state E (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

7BOG|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BOG_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1323

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7BOG|1|A|G|462
7BOG|1|A|U|463
7BOG|1|A|U|464
7BOG|1|A|A|465
7BOG|1|A|A|466
7BOG|1|A|U|467
7BOG|1|A|A|468
7BOG|1|A|C|469
7BOG|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains