HL_7BTB_005

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

7BTB|1|1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BTB_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1026

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7BTB|1|1|U|194
7BTB|1|1|U|195
7BTB|1|1|G|196
7BTB|1|1|G|197
7BTB|1|1|A|198
7BTB|1|1|A|199
7BTB|1|1|C|200
7BTB|1|1|A|201

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A

Chain e

60S ribosomal protein L32